Thousands of security personnel have been deployed in Delhi along with some 15,000 cameras.
PM Narendra Modi stressed the importance of the visit by breaking protocol to receive Mr Obama personally at Delhi airport.
Their talks will primarily focus on trade, but also take in security, nuclear power and climate change.
Mr Obama will also be the guest of honour at Monday's Republic Day celebrations.
'Great honour'
After his arrival, the US president travelled to the presidential palace, Rashtrapati Bhavan, for an official welcoming ceremony with his Indian counterpart Pranab Mukherjee.
Mr Obama said: "This is a great honour, we are grateful for this extraordinary hospitality."
Mr Obama will also lay a wreath at the Mahatma Gandhi memorial and later attend a state dinner.
He is being accompanied by a delegation of US business leaders for the important trade talks.
In his talks with Mr Modi, he is also expected to discuss co-operation on climate change and nuclear energy, concerns over security in South Asia and counter-terrorism measures.
Mr Obama will join Mr Modi in his monthly radio address to reach out to millions of Indians with no access to television.
The BBC's Geeta Pandey in Delhi says security around the Republic Day parade is generally tight, but this year the high-profile visit has taken preparations to a new level.
India Gate and the Rajpath (the King's Avenue), where Monday's parade takes place, have been out of bounds for most people for the past few days, with thousands of policemen on duty.
Security has been upgraded at several up-market hotels, where the US president and his team will be staying.
Traffic restrictions have been put in place across the city, and extra checks have been taking place at metro stations.
Police have also been going door-to-door carrying out verification checks on residents.
Security has also been tightened at airports, ports and railways stations across the country.
This is the first time a sitting US president has returned to India for an second visit - a sign of growing India-US ties.
The new US ambassador in Delhi, Richard Verma, said there was "no question this is a defining time in the US-India relationship."
"Things not only feel different, they are different," he said.
Mr Obama's visit to India has been shortened so he can visit Saudi Arabia and pay his respects following the death of King Abdullah. It means he will not now visit the Taj Mahal.
Source: BBC